Package: plantecowrap 1.0.5
plantecowrap: Enhancing Capabilities of 'plantecophys'
Provides wrapping functions to add to capabilities to 'plantecophys' (Duursma, 2015, <doi:10.1371/journal.pone.0143346>). Key added capabilities include temperature responses of mesophyll conductance (gm, gmeso), apparent Michaelis-Menten constant for rubisco carboxylation in air (Km, Kcair),and photorespiratory CO2 compensation point (GammaStar) for fitting A-Ci or A-Cc curves for C3 plants (for temperature responses of gm, Km, & GammaStar, see Bernacchi et al., 2002, <doi:10.1104/pp.008250>; for theory on fitting A-Ci or A-Cc curves, see Farquhar et al., 1980; <doi:10.1007/BF00386231>, von Caemmerer, 2000, ISBN:064306379X; Ethier & Livingston, 2004 <doi:10.1111/j.1365-3040.2004.01140.x>; and Gu et al., 2010, <doi:10.1111/j.1365-3040.2010.02192.x>). Includes the ability to fit the Arrhenius and modified Arrhenius temperature response functions (see Medlyn et al., 2002, <doi:10.1046/j.1365-3040.2002.00891.x>) for maximum rubisco carboxylation rates (Vcmax) and maximum electron transport rates (Jmax) (see Farquhar et al., 1980; <doi:10.1007/BF00386231>).
Authors:
plantecowrap_1.0.5.tar.gz
plantecowrap_1.0.5.zip(r-4.5)plantecowrap_1.0.5.zip(r-4.4)plantecowrap_1.0.5.zip(r-4.3)
plantecowrap_1.0.5.tgz(r-4.4-any)plantecowrap_1.0.5.tgz(r-4.3-any)
plantecowrap_1.0.5.tar.gz(r-4.5-noble)plantecowrap_1.0.5.tar.gz(r-4.4-noble)
plantecowrap_1.0.5.tgz(r-4.4-emscripten)plantecowrap_1.0.5.tgz(r-4.3-emscripten)
plantecowrap.pdf |plantecowrap.html✨
plantecowrap/json (API)
# Install 'plantecowrap' in R: |
install.packages('plantecowrap', repos = c('https://jstinzi.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/jstinzi/plantecowrap/issues
Last updated 5 years agofrom:3fcd4cdb4a. Checks:OK: 7. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 25 2024 |
R-4.5-win | OK | Oct 25 2024 |
R-4.5-linux | OK | Oct 25 2024 |
R-4.4-win | OK | Oct 25 2024 |
R-4.4-mac | OK | Oct 25 2024 |
R-4.3-win | OK | Oct 25 2024 |
R-4.3-mac | OK | Oct 25 2024 |
Exports:acisummaryarrheniusfit_topt_VJfit_topt_VJsfitacis2get_t_graphsget_t_parsmodarrheniusprint_graphstoptfit
Dependencies:clicolorspacecpp11dplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmepillarpkgconfigplantecophyspurrrR6RColorBrewerrlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Extracts coefficients from fitacis2 | acisummary |
The Arrhenius temperature response equation | arrhenius |
Fitting the temperature responses of Vcmax and Jmax | fit_topt_VJ |
Fitting multiple temperature response curves | fit_topt_VJs |
Fit A-Ci curves with custom kinetics | fitacis2 |
Get temperature response graphs | get_t_graphs |
Get temperature response parameters | get_t_pars |
Fitting the peaked Arrhenius temperature response model | modarrhenius |
Printing graphs from a list of graphs | print_graphs |
Fitting the Topt temperature response model | toptfit |