Package: plantecowrap 1.0.5

plantecowrap: Enhancing Capabilities of 'plantecophys'

Provides wrapping functions to add to capabilities to 'plantecophys' (Duursma, 2015, <doi:10.1371/journal.pone.0143346>). Key added capabilities include temperature responses of mesophyll conductance (gm, gmeso), apparent Michaelis-Menten constant for rubisco carboxylation in air (Km, Kcair),and photorespiratory CO2 compensation point (GammaStar) for fitting A-Ci or A-Cc curves for C3 plants (for temperature responses of gm, Km, & GammaStar, see Bernacchi et al., 2002, <doi:10.1104/pp.008250>; for theory on fitting A-Ci or A-Cc curves, see Farquhar et al., 1980; <doi:10.1007/BF00386231>, von Caemmerer, 2000, ISBN:064306379X; Ethier & Livingston, 2004 <doi:10.1111/j.1365-3040.2004.01140.x>; and Gu et al., 2010, <doi:10.1111/j.1365-3040.2010.02192.x>). Includes the ability to fit the Arrhenius and modified Arrhenius temperature response functions (see Medlyn et al., 2002, <doi:10.1046/j.1365-3040.2002.00891.x>) for maximum rubisco carboxylation rates (Vcmax) and maximum electron transport rates (Jmax) (see Farquhar et al., 1980; <doi:10.1007/BF00386231>).

Authors:Joseph Stinziano [aut, cre], Demi Gamble [aut], Robert Sharwood [aut], Warren Conaty [aut]

plantecowrap_1.0.5.tar.gz
plantecowrap_1.0.5.zip(r-4.5)plantecowrap_1.0.5.zip(r-4.4)plantecowrap_1.0.5.zip(r-4.3)
plantecowrap_1.0.5.tgz(r-4.4-any)plantecowrap_1.0.5.tgz(r-4.3-any)
plantecowrap_1.0.5.tar.gz(r-4.5-noble)plantecowrap_1.0.5.tar.gz(r-4.4-noble)
plantecowrap_1.0.5.tgz(r-4.4-emscripten)plantecowrap_1.0.5.tgz(r-4.3-emscripten)
plantecowrap.pdf |plantecowrap.html
plantecowrap/json (API)

# Install 'plantecowrap' in R:
install.packages('plantecowrap', repos = c('https://jstinzi.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jstinzi/plantecowrap/issues

On CRAN:

4.85 score 5 stars 14 scripts 119 downloads 10 exports 38 dependencies

Last updated 5 years agofrom:3fcd4cdb4a. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 25 2024
R-4.5-winOKOct 25 2024
R-4.5-linuxOKOct 25 2024
R-4.4-winOKOct 25 2024
R-4.4-macOKOct 25 2024
R-4.3-winOKOct 25 2024
R-4.3-macOKOct 25 2024

Exports:acisummaryarrheniusfit_topt_VJfit_topt_VJsfitacis2get_t_graphsget_t_parsmodarrheniusprint_graphstoptfit

Dependencies:clicolorspacecpp11dplyrfansifarvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmepillarpkgconfigplantecophyspurrrR6RColorBrewerrlangscalesstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

Example_dataset_creation

Rendered fromExample_dataset_creation.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2020-03-30
Started: 2020-03-26

Using plantecowrap

Rendered fromUsing_plantecowrap.Rmdusingknitr::rmarkdownon Oct 25 2024.

Last update: 2020-04-02
Started: 2020-03-13